Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1rbm KT5 Trifunctional purine biosynthetic protein adenosine-3 2.1.2.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1rbm KT5Trifunctional purine biosynthetic protein adenosine-3 2.1.2.2 1.299
1rby KEUTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 1.206
1rbq KEUTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 1.190
1rc0 KT5Trifunctional purine biosynthetic protein adenosine-3 2.1.2.2 1.171
1njs KEUTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 1.138
1rbz KT5Trifunctional purine biosynthetic protein adenosine-3 2.1.2.2 1.131
1rc1 KT3Trifunctional purine biosynthetic protein adenosine-3 2.1.2.2 1.128
1c3e NHRPhosphoribosylglycinamide formyltransferase / 0.705
4ew3 DXZTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 0.696
4ew2 DXYTrifunctional purine biosynthetic protein adenosine-3 2.1.2.2 0.669