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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qr2 FAD Ribosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 1.375
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 1.129
4zvn FADRibosyldihydronicotinamide dehydrogenase [quinone] / 1.111
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 1.101
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 1.060
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 1.043
4qof FMNRibosyldihydronicotinamide dehydrogenase [quinone] / 1.034
1kbq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.997
1kbo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.979
1dxo FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.973
1h66 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.966
1dxq FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.958
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.951
1h69 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.950
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.939
1gg5 FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.937
1d4a FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.929
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.912
4gi5 FADPutative NAD(P)H dehydrogenase (Quinone) / 0.799
4j8p FMNFlavodoxin / 0.797
3klb FMNUncharacterized protein / 0.781
2b3d FADModulator of drug activity B / 0.774
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.769
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.759
4r81 FMNPredicted NADH dehydrogenase / 0.757
4m0c FMNFMN-dependent NADH-azoreductase 1 / 0.736
3lcm FADPutative oxidoreductase / 0.735
3rpe FADPutative modulator of drug activity / 0.731
2ohj FMNType A flavoprotein FprA 1 0.725
2q9u FMNA-type flavoprotein / 0.724
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.713
3w77 FMNFMN-dependent NADH-azoreductase / 0.709
2z9d FMNFMN-dependent NADH-azoreductase / 0.703
1t5b FMNFMN-dependent NADH-azoreductase / 0.695
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.691
4tmb FMNOld yellow enzyme / 0.682
3f03 FMNPentaerythritol tetranitrate reductase / 0.680
2v5u FMNFlavodoxin / 0.678
2ohi FMNType A flavoprotein FprA 1 0.676
1ycf FMNNitric oxide reductase 1 0.672
1akr FMNFlavodoxin / 0.671
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.670
3l67 FMNXenobiotic reductase / 0.670
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.670
1h63 FMNPentaerythritol tetranitrate reductase / 0.667
1llw FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.667
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.667
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.666
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.664
4rnu FMNNADPH dehydrogenase 1 1.6.99.1 0.662
1lm1 FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.659
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.657
4e2b FMNDehydrogenase / 0.655
3f90 FMNFlavodoxin / 0.654
3l5l FMNXenobiotic reductase / 0.654
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.654
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.654
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.653
5cpm FNRNADH:flavin oxidoreductase / 0.652
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.651
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.651
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.650