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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qlt FAD Vanillyl-alcohol oxidase 1.1.3.38

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qlt FADVanillyl-alcohol oxidase 1.1.3.38 1.371
4bca FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.694
2wzw FMNNitroreductase NfnB / 0.686
2v1a FMNNPH1-1 / 0.674
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.671
2wzv FMNNitroreductase NfnB / 0.668
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 0.660
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.660
3fg2 FADPutative rubredoxin reductase / 0.660
4b5n FMNNAD(P)H:flavin oxidoreductase Sye4 / 0.660
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.659
3n3b FMNProtein NrdI / 0.659
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.658
5djt FMNNPH1-2 / 0.656
3cgb FADCoenzyme A disulfide reductase / 0.655
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.654
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 0.653
3of4 FMNNitroreductase / 0.652
4hia FMNLOV protein / 0.652
2v0u FMNNPH1-1 / 0.651
4j8p FMNFlavodoxin / 0.651
4kuk RBFPutative blue-light photoreceptor / 0.651