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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1qbs DMP Gag-Pol polyprotein 3.4.23.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1qbs DMPGag-Pol polyprotein 3.4.23.16 1.059
1qbr XV6Gag-Pol polyprotein 3.4.23.16 0.842
1dmp DMQGag-Pol polyprotein 3.4.23.16 0.837
1met DMPGag-Pol polyprotein 3.4.23.16 0.832
1bwa XV6Gag-Pol polyprotein 3.4.23.16 0.826
1bv7 XV6Gag-Pol polyprotein 3.4.23.16 0.809
1ajx AH1Gag-Pol polyprotein 3.4.23.16 0.808
1bv9 XV6Gag-Pol polyprotein 3.4.23.16 0.794
1mes DMPGag-Pol polyprotein 3.4.23.16 0.777
1meu DMPGag-Pol polyprotein 3.4.23.16 0.774
1bve DMPGag-Pol polyprotein 3.4.23.16 0.769
1qbu 846Gag-Pol polyprotein 3.4.23.16 0.765
1hwr 216Gag-Pol polyprotein 3.4.23.16 0.755
3o9f K2DGag-Pol polyprotein / 0.737
1hvr XK2Gag-Pol polyprotein / 0.729
4gb2 0LQGag-Pol polyprotein 2.7.7.49 0.711
3o9a K14Pol polyprotein / 0.709
1g35 AHFGag-Pol polyprotein 3.4.23.16 0.706
3o9h K2EGag-Pol polyprotein / 0.703
1hvh Q82Gag-Pol polyprotein 3.4.23.16 0.701
1hvk A79Gag-Pol polyprotein / 0.691
1kzk JE2Gag-Pol polyprotein 3.4.23.16 0.689
2i4v DJRV-1 protease / 0.689
3vf7 031Gag-Pol polyprotein 3.4.23.16 0.687
1z1h HBBGag-Pol polyprotein 3.4.23.16 0.686
2qd6 065Gag-Pol polyprotein 3.4.23.16 0.684
4djp M73Pol polyprotein / 0.684
3nu6 478Gag-Pol polyprotein 3.4.23.16 0.680
3djk G55Gag-Pol polyprotein 3.4.23.16 0.677
3sa9 A68Protease / 0.677
2a4f AAUV-1 protease / 0.673
1g2k NM1Gag-Pol polyprotein 3.4.23.16 0.671
3mxd K53Gag-Pol polyprotein 3.4.23.16 0.663
1siv PSIGag-Pol polyprotein / 0.658
2wl0 5AHGag-Pol polyprotein / 0.656
2hs1 017Protease / 0.655
4hla 017Gag-Pol polyprotein 3.4.23.16 0.655
3qaa G04Gag-Pol polyprotein 3.4.23.16 0.654
3ok9 G52Gag-Pol polyprotein 3.4.23.16 0.653
1hpv 478Gag-Pol polyprotein / 0.652
3st5 G89Gag-Pol polyprotein 3.4.23.16 0.652
2p3b 3TLV-1 PROTEASE protein / 0.650
2p3b 3TLV-1 protease / 0.650
2z4o 065Gag-Pol polyprotein 3.4.23.16 0.650
3qp0 NI8Gag-Pol polyprotein 3.4.23.16 0.650