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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1q8t Y27 cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1q8t Y27cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.847
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
2gnf Y27cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.714
1svh I08cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.685
1xh7 R96cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.677
1xh6 R94cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.672
2qhm 7CSSerine/threonine-protein kinase Chk1 2.7.11.1 0.668
1xh8 R55cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.663
4e5f 0N7Polymerase acidic protein / 0.660
1xh5 R68cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.653
1sve I01cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652