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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1q3g UDA UDP-N-acetylglucosamine 1-carboxyvinyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1q3g UDAUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.566
1ryw EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.229
3kr6 UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.042
3lth UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.038
1a2n TETUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.027
3swq EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.018
3kqj UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.001
3upk UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 1.000
3v4t UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.999
4r7u UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.973
3vcy UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.958
2rl1 UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.915
2rl2 UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.900
1uae UD1UDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.884
3iss EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.849
2yvw EPUUDP-N-acetylglucosamine 1-carboxyvinyltransferase / 0.825
2py7 ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.676
1ytm ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.671
2olr ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.665
1os1 ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.663
4dld TZGGlutamate receptor ionotropic, kainate 1 / 0.654
3qj7 UMPThymidylate synthase ThyA / 0.653
4zgn ATPCell division cycle protein 123 / 0.652