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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1pw6 FRB Interleukin-2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1pw6 FRBInterleukin-2 / 1.168
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4djy 0KRBeta-secretase 1 3.4.23.46 0.656
4fud 6UPUrokinase-type plasminogen activator 3.4.21.73 0.656
1c5n ESIProthrombin 3.4.21.5 0.650
1vaf ARRNitric oxide synthase, inducible 1.14.13.39 0.650