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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1pf9 ADP 60 kDa chaperonin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1pf9 ADP60 kDa chaperonin / 1.054
1kp8 AGS60 kDa chaperonin / 0.828
1sx4 ADP60 kDa chaperonin / 0.808
4ki8 ADP60 kDa chaperonin / 0.786
3ruq ADPChaperonin / 0.730
1q3s ADPThermosome subunit alpha / 0.685
3ruv ANPChaperonin / 0.685
1a9x ADPCarbamoyl-phosphate synthase large chain / 0.680
3rus ADPChaperonin / 0.680
1b39 ATPCyclin-dependent kinase 2 2.7.11.22 0.652
3qyz Z8BMitogen-activated protein kinase 1 2.7.11.24 0.652