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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1own FAD Deoxyribodipyrimidine photo-lyase 4.1.99.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1own FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.348
1owm FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.329
1owp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.291
1owo FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.277
1tez FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.198
1owl FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.196
1qnf FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.135
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.064
1u3d FADCryptochrome-1 / 1.056
1dnp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.055
2j4d FADCryptochrome DASH, chloroplastic/mitochondrial / 1.040
1u3c FADCryptochrome-1 / 1.023
2vtb FADCryptochrome DASH, chloroplastic/mitochondrial / 0.991
2j08 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.969
2wq7 FADRE11660p / 0.963
3cvy FADRE11660p / 0.958
2j07 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.952
2wq6 FADRE11660p / 0.950
3cvu FADRE11660p / 0.944
1np7 FADCryptochrome DASH / 0.943
4i6g FADCryptochrome-2 / 0.932
2j09 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.926
4cdm FADDeoxyribodipyrimidine photolyase / 0.902
3umv FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.894
4jzy FADCryptochrome-1 / 0.878
2wb2 FADRE11660p / 0.843
3zxs FADDeoxyribodipyrimidine photolyase-related protein / 0.841
4dja FAD(6-4) photolyase / 0.802
2ijg FADCryptochrome DASH, chloroplastic/mitochondrial / 0.783
4gu5 FADCryptochrome-1 / 0.752
1zp4 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.698
3gfy FMNUncharacterized protein / 0.688
3gfx FMNUncharacterized protein / 0.679
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.672
3gg0 FMNUncharacterized protein / 0.671
3gg1 FMNUncharacterized protein / 0.671
5j4e FMNSensory box protein / 0.665
1nb9 RBFRiboflavin kinase 2.7.1.26 0.662
3ad9 FADSubunit beta of sarcosine oxidase / 0.661
5eb5 FAD(R)-mandelonitrile lyase 1 4.1.2.10 0.660
1t6z RBFRiboflavin biosynthesis protein / 0.658
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.658
4bc7 FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.656
2iyi FMNAppA, antirepressor of ppsR, sensor of blue light / 0.655
2vxa RBFDodecin / 0.654
1s4m LUMRiboflavin biosynthesis protein / 0.652
1cc2 FADCholesterol oxidase 1.1.3.6 0.651
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.651
2iyg FMNAppA, antirepressor of ppsR, sensor of blue light / 0.651