sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1oo5 | FMN | Oxygen-insensitive NAD(P)H nitroreductase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 1oo5 | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.314 | |
| 1icu | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.255 | |
| 1kqb | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.248 | |
| 1kqd | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.215 | |
| 1kqc | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.205 | |
| 1ylr | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.186 | |
| 1oon | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.165 | |
| 1ooq | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.159 | |
| 1nec | FMN | Oxygen-insensitive NAD(P)H nitroreductase | 1 | 1.150 | |
| 1yki | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.143 | |
| 3x22 | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.102 | |
| 1icv | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.100 | |
| 1ylu | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 1.080 | |
| 1vfr | FMN | Major NAD(P)H-flavin oxidoreductase | 1.6.99 | 1.037 | |
| 1ds7 | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.979 | |
| 3of4 | FMN | Nitroreductase | / | 0.978 | |
| 2wzw | FMN | Nitroreductase NfnB | / | 0.957 | |
| 3x21 | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.955 | |
| 3gag | FMN | Putative NADH dehydrogenase NAD(P)H nitroreductase | / | 0.935 | |
| 2wzv | FMN | Nitroreductase NfnB | / | 0.931 | |
| 3koq | FMN | Putative nitroreductase | / | 0.919 | |
| 3ge6 | FMN | Nitroreductase | / | 0.913 | |
| 3pxv | FMN | Nitroreductase | / | 0.882 | |
| 3qdl | FMN | Oxygen-insensitive NADPH nitroreductase | / | 0.882 | |
| 3bem | FMN | Putative NAD(P)H nitroreductase MhqN | 1 | 0.859 | |
| 4eo3 | FMN | Bacterioferritin comigratory protein/NADH dehydrogenase | / | 0.854 | |
| 4xoo | FMN | Coenzyme F420:L-glutamate ligase | / | 0.845 | |
| 2hay | FMN | Putative NAD(P)H-flavin oxidoreductase | / | 0.842 | |
| 4qly | FMN | Enone reductase CLA-ER | / | 0.831 | |
| 3e39 | FMN | Nitroreductase | / | 0.822 | |
| 2isl | FNR | 5,6-dimethylbenzimidazole synthase | 1.13.11.79 | 0.814 | |
| 3gfd | FMN | Iodotyrosine deiodinase 1 | 1.21.1.1 | 0.807 | |
| 4ttc | FMN | Iodotyrosine deiodinase 1 | / | 0.794 | |
| 3gh8 | FMN | Iodotyrosine deiodinase 1 | 1.21.1.1 | 0.787 | |
| 2fre | FMN | NAD(P)H-flavin oxidoreductase | / | 0.777 | |
| 2i51 | FMN | Pyridoxamine 5'-phosphate oxidase-related, FMN-binding | / | 0.733 | |
| 3e4v | FMN | Uncharacterized protein | / | 0.732 | |
| 3hj9 | FMN | Uncharacterized protein | / | 0.729 | |
| 2bkj | FMN | NADPH-flavin oxidoreductase | / | 0.722 | |
| 2ifa | FMN | Uncharacterized protein | / | 0.719 | |
| 3eo8 | FMN | Putative nitroreductase | / | 0.715 | |
| 4hnb | FMN | LOV protein | / | 0.707 | |
| 3eof | FMN | Putative oxidase | / | 0.703 | |
| 4y9l | FAD | Acyl-CoA dehydrogenase family member 11 | / | 0.702 | |
| 4hia | FMN | LOV protein | / | 0.693 | |
| 2z1q | FAD | Acyl-CoA dehydrogenase | / | 0.692 | |
| 3djl | FAD | Putative acyl-CoA dehydrogenase AidB | 1.3.99 | 0.692 | |
| 3pft | FMN | Flavin reductase | / | 0.692 | |
| 2isj | FMN | 5,6-dimethylbenzimidazole synthase | 1.13.11.79 | 0.691 | |
| 4hj3 | FMN | LOV protein | / | 0.683 | |
| 2d29 | FAD | Acyl-CoA dehydrogenase | / | 0.681 | |
| 2qa1 | FAD | PgaE | / | 0.680 | |
| 3to0 | FMN | Iodotyrosine deiodinase 1 | 1.21.1.1 | 0.679 | |
| 2isk | FNR | 5,6-dimethylbenzimidazole synthase | 1.13.11.79 | 0.678 | |
| 1a8p | FAD | Ferredoxin--NADP reductase | / | 0.673 | |
| 2o12 | FMN | Chorismate synthase | / | 0.673 | |
| 4eer | FMN | Phototropin-2 | 2.7.11.1 | 0.671 | |
| 2pg0 | FAD | Acyl-CoA dehydrogenase | / | 0.662 | |
| 4d7e | FAD | Putative lysine-N-oxygenase | / | 0.662 | |
| 3n3b | FMN | Protein NrdI | / | 0.661 | |
| 3p4t | FAO | Putative acyl-CoA dehydrogenase | / | 0.661 | |
| 1mok | FAD | 2-oxopropyl-CoM reductase, carboxylating | 1.8.1.5 | 0.660 | |
| 1ep3 | FAD | Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit | / | 0.659 | |
| 3haz | FAD | Bifunctional protein PutA | / | 0.657 | |
| 1rz0 | FAD | Phenol 2-hydroxylase component B | / | 0.655 | |
| 3clt | FAD | Electron transfer flavoprotein subunit alpha | / | 0.655 | |
| 1eje | FMN | Protein MTH_152 | / | 0.654 | |
| 1fea | FAD | Trypanothione reductase | 1.8.1.12 | 0.654 | |
| 1tdo | FAD | L-amino-acid oxidase | 1.4.3.2 | 0.654 | |
| 1udy | FAD | Medium-chain specific acyl-CoA dehydrogenase, mitochondrial | 1.3.8.7 | 0.654 | |
| 4qi5 | FAD | Cellobiose dehydrogenase | / | 0.653 | |
| 1t0i | FMN | NAD(P)H-dependent FMN reductase LOT6 | / | 0.652 | |
| 2zry | FNR | Isopentenyl-diphosphate delta-isomerase | / | 0.651 | |
| 5idw | NAP | Short-chain dehydrogenase/reductase SDR | / | 0.650 |