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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1o0d 163 Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1o0d 163Prothrombin 3.4.21.5 0.998
2anm CDOProthrombin 3.4.21.5 0.838
4bam MM9Prothrombin 3.4.21.5 0.793
4bah MELProthrombin 3.4.21.5 0.777
4ban M6SProthrombin 3.4.21.5 0.774
4ayy 9MXProthrombin 3.4.21.5 0.772
4bao MVFProthrombin 3.4.21.5 0.771
1k21 IGNProthrombin 3.4.21.5 0.763
1k22 MELProthrombin 3.4.21.5 0.759
4bak M67Prothrombin 3.4.21.5 0.758
4baq M4ZProthrombin 3.4.21.5 0.741
4ax9 N5NProthrombin 3.4.21.5 0.737
1wtg 3BPCoagulation factor VII 3.4.21.21 0.733
2bdy UNBProthrombin 3.4.21.5 0.731
4az2 9MUProthrombin 3.4.21.5 0.730
2a2x NA9Prothrombin 3.4.21.5 0.727
2zhq 27UProthrombin 3.4.21.5 0.725
1c4u IH1Prothrombin 3.4.21.5 0.720
2zgx 29UProthrombin 3.4.21.5 0.720
1wqv PSMCoagulation factor VII 3.4.21.21 0.718
2zda 32UProthrombin 3.4.21.5 0.716
2zi2 24UProthrombin 3.4.21.5 0.712
4ayv 9MQProthrombin 3.4.21.5 0.710
2zhf 49UProthrombin 3.4.21.5 0.709
1ta2 176Prothrombin 3.4.21.5 0.708
1nzq 162Prothrombin 3.4.21.5 0.707
2cf8 ESHProthrombin 3.4.21.5 0.704
1ypk CCRProthrombin 3.4.21.5 0.702
2cf9 348Prothrombin 3.4.21.5 0.702
1nt1 T76Prothrombin 3.4.21.5 0.701
3utu 1TSProthrombin 3.4.21.5 0.699
4e7r 0NWProthrombin 3.4.21.5 0.697
2znk 31UProthrombin 3.4.21.5 0.696
1ype UIPProthrombin 3.4.21.5 0.694
2zfq 45UProthrombin 3.4.21.5 0.693
1c5n ESIProthrombin 3.4.21.5 0.688
2zg0 50UProthrombin 3.4.21.5 0.684
2zhe 13UProthrombin 3.4.21.5 0.684
1xm1 GAHProthrombin 3.4.21.5 0.682
3biu 10UProthrombin 3.4.21.5 0.681
3biv 11UProthrombin 3.4.21.5 0.681
2zgb 21UProthrombin 3.4.21.5 0.678
2zc9 22UProthrombin 3.4.21.5 0.676
2zp0 PI0Coagulation factor VII 3.4.21.21 0.676
1mu8 CDBProthrombin 3.4.21.5 0.675
2r2m I50Prothrombin 3.4.21.5 0.675
1ypl RA8Prothrombin 3.4.21.5 0.674
3eq0 2TSProthrombin 3.4.21.5 0.673
1mue CDDProthrombin 3.4.21.5 0.672
1c1u BAIProthrombin 3.4.21.5 0.671
1lpk CBBCoagulation factor X 3.4.21.6 0.671
1riw OSCProthrombin 3.4.21.5 0.671
2zhw 12UProthrombin 3.4.21.5 0.671
2gde SN3Prothrombin 3.4.21.5 0.669
2zf0 51UProthrombin 3.4.21.5 0.669
1ae8 AZLProthrombin 3.4.21.5 0.667
1sl3 170Prothrombin 3.4.21.5 0.667
1wv7 5PICoagulation factor VII 3.4.21.21 0.665
1mu6 CDAProthrombin 3.4.21.5 0.664
3hat GLY_VAL_ARG_RNGProthrombin 3.4.21.5 0.664
1oyt FSNProthrombin 3.4.21.5 0.663
1c4v IH2Prothrombin 3.4.21.5 0.662
2zfp 19UProthrombin 3.4.21.5 0.662
3qwc 98PProthrombin 3.4.21.5 0.662
1d4p BPPProthrombin 3.4.21.5 0.660
2pks G44Prothrombin 3.4.21.5 0.660
3c27 DKKProthrombin 3.4.21.5 0.660
1zsk 421Coagulation factor XI 3.4.21.27 0.658
3f68 91UProthrombin 3.4.21.5 0.657
2zdv 37UProthrombin 3.4.21.5 0.655
1owi 426Urokinase-type plasminogen activator 3.4.21.73 0.652
2ziq 26UProthrombin 3.4.21.5 0.652
1ypm RA4Prothrombin 3.4.21.5 0.650
3dhk 23UProthrombin 3.4.21.5 0.650