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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nvb NAD Pentafunctional AROM polypeptide

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1nvb NADPentafunctional AROM polypeptide / 1.174
1nr5 NADPentafunctional AROM polypeptide / 0.858
4p53 NAI2-epi-5-epi-valiolone synthase / 0.785
5hvn NAD3-dehydroquinate synthase / 0.780
1sg6 NADPentafunctional AROM polypeptide / 0.779
3okf NAD3-dehydroquinate synthase 4.2.3.4 0.734
3clh NAD3-dehydroquinate synthase 4.2.3.4 0.728
1nve NADPentafunctional AROM polypeptide / 0.722
1xaj NAD3-dehydroquinate synthase / 0.715
1xal NAD3-dehydroquinate synthase / 0.711
5br4 NADLactaldehyde reductase 1.1.1.77 0.705
3qbd NAD3-dehydroquinate synthase 4.2.3.4 0.702
1nrx NADPentafunctional AROM polypeptide / 0.694
1xah NAD3-dehydroquinate synthase / 0.692
1xag NAD3-dehydroquinate synthase / 0.679
1jq5 NADGlycerol dehydrogenase 1.1.1.6 0.678
1nva ADPPentafunctional AROM polypeptide / 0.676
3zok NAD3-dehydroquinate synthase, chloroplastic 4.2.3.4 0.675
1nvf ADPPentafunctional AROM polypeptide / 0.661