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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1nuu NAD Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1nuu NADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 / 1.237
1nuq NXXNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 / 1.141
1kqn NADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 2.7.7.1 0.857
1kqo DNDNicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 2.7.7.1 0.856
1nup NMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 / 0.824
2h2a DNDProbable nicotinate-nucleotide adenylyltransferase / 0.741
1kr2 TADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 2.7.7.1 0.730
2qtr NXXProbable nicotinate-nucleotide adenylyltransferase / 0.718
3ts1 TYATyrosine--tRNA ligase 6.1.1.1 0.671
4wso NADProbable nicotinate-nucleotide adenylyltransferase / 0.670
3icp NADNAD-dependent epimerase/dehydratase / 0.662
3ko8 NADNAD-dependent epimerase/dehydratase / 0.661
1vbn YSATyrosine--tRNA ligase 6.1.1.1 0.655
1n1d C2GGlycerol-3-phosphate cytidylyltransferase 2.7.7.39 0.653