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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ngj ANP Heat shock cognate 71 kDa protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ngj ANPHeat shock cognate 71 kDa protein / 1.080
1nge ATPHeat shock cognate 71 kDa protein / 1.001
1ngi ANPHeat shock cognate 71 kDa protein / 0.991
1ngh ATPHeat shock cognate 71 kDa protein / 0.947
1ngc ADPHeat shock cognate 71 kDa protein / 0.906
3hsc ADPHeat shock cognate 71 kDa protein / 0.906
1ngd ADPHeat shock cognate 71 kDa protein / 0.905
5f1x ATP78 kDa glucose-regulated protein / 0.875
3ldl ATP78 kDa glucose-regulated protein / 0.874
3ldo ANP78 kDa glucose-regulated protein / 0.873
1ngb ADPHeat shock cognate 71 kDa protein / 0.872
5f2r ACP78 kDa glucose-regulated protein / 0.837
1ats ADPHeat shock cognate 71 kDa protein / 0.835
2qwl ADPHeat shock cognate 71 kDa protein / 0.834
3fe1 ADPHeat shock 70 kDa protein 6 / 0.792
2qwq ADPHeat shock cognate 71 kDa protein / 0.765
2qwr ANPHeat shock cognate 71 kDa protein / 0.754
4b9q ATPChaperone protein DnaK / 0.734
2qwn ADPHeat shock cognate 71 kDa protein / 0.722
1atr ADPHeat shock cognate 71 kDa protein / 0.716
4h5t ADPHeat shock cognate 71 kDa protein / 0.713
1nlv ATPMajor actin / 0.701
1ijj ATPActin, alpha skeletal muscle / 0.680
1kxp ATPActin, alpha skeletal muscle / 0.680
3ule ATPActin-related protein 2 / 0.680
3mn9 ATPActin-5C / 0.669
3m1f ATPActin, alpha skeletal muscle / 0.666
1eqy ATPActin, alpha skeletal muscle / 0.657
1yxq ATPActin, alpha skeletal muscle / 0.653