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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1n9m BTN Streptavidin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1n9m BTNStreptavidin / 1.031
3ry2 BTNStreptavidin / 0.994
2y3f BTNStreptavidin / 0.981
3wyq BTNStreptavidin / 0.980
2izf BTNStreptavidin / 0.975
2izg BTNStreptavidin / 0.972
2rtf BTNStreptavidin / 0.972
1df8 BTNStreptavidin / 0.962
2rtg BTNStreptavidin / 0.962
1mk5 BTNStreptavidin / 0.960
2izh BTNStreptavidin / 0.957
2rtd BTNStreptavidin / 0.956
4gda BTNStreptavidin / 0.945
3wyp BSOStreptavidin / 0.944
1swg BTNStreptavidin / 0.938
3wzn BTNStreptavidin / 0.935
4gd9 BTNStreptavidin / 0.935
2zsc BTNTamavidin2 / 0.932
1luq BTNStreptavidin / 0.924
4dne DTBStreptavidin / 0.924
1i9h BNIStreptavidin / 0.921
1n43 BTNStreptavidin / 0.921
2izi BTNStreptavidin / 0.919
2izj BTNStreptavidin / 0.918
1nqm BTNStreptavidin / 0.916
1swe BTNStreptavidin / 0.914
1swn BTNStreptavidin / 0.911
1swt BTNStreptavidin / 0.909
2rte BTNStreptavidin / 0.909
1ndj BTNStreptavidin / 0.906
2izl IMIStreptavidin / 0.901
1stp BTNStreptavidin / 0.898
2rtr IMIStreptavidin / 0.879
4yvb BTNStreptavidin / 0.877
3rdo BTNStreptavidin / 0.863
2uyw BTNAvd protein / 0.858
1lcz BH7Streptavidin / 0.857
4bx7 B4FStreptavidin / 0.851
1mep BTNStreptavidin / 0.847
1lcw SHMStreptavidin / 0.846
1rxh BNIStreptavidin / 0.846
2rto IMIStreptavidin / 0.841
1swr BTNStreptavidin / 0.837
2fhl BNIAvidin-related protein 4/5 / 0.835
2fhn BNIAvidin-related protein 4/5 / 0.833
2rtm IMIStreptavidin / 0.832
4bcs BTNAvidin-related protein 4/5 / 0.826
1y52 BTNAvidin-related protein 4/5 / 0.824
4bj8 BTNAvidin / 0.820
3vgw NVZAvidin / 0.818
4z28 BTNHoefavidin / 0.817
2rtp IMIStreptavidin / 0.813
1swp BTNStreptavidin / 0.809
3ew2 BTNHypothetical conserved protein / 0.808
1nc9 IMIStreptavidin / 0.801
2c4i BTNAvidin / 0.800
1swp BTQStreptavidin / 0.799
2rtq IMIStreptavidin / 0.799
3vhi VHIAvidin / 0.775
1swd BTNStreptavidin / 0.770
3t2w BTNAvidin/streptavidin / 0.770
2jgs BTNAvidin / 0.753
1rxj BNIStreptavidin / 0.746
2rtn IMIStreptavidin / 0.744
2rtl IMIStreptavidin / 0.743
3rdq DTBStreptavidin / 0.736
2uz2 BTNAvd protein / 0.730
4ggz BTNBll1558 protein / 0.721
1ij8 BNIAvidin / 0.720
2avi BTNAvidin / 0.698
1ldq SHMAvidin / 0.676
3vhm NPKAvidin / 0.676
2yne NHWGlycylpeptide N-tetradecanoyltransferase / 0.651
4b13 NHWGlycylpeptide N-tetradecanoyltransferase / 0.651
4c68 NHWGlycylpeptide N-tetradecanoyltransferase / 0.651
2rtk GLLStreptavidin / 0.650