Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1n5i TMP Thymidylate kinase 2.7.4.9

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1n5i TMPThymidylate kinase 2.7.4.9 1.060
1w2g THMThymidylate kinase 2.7.4.9 0.821
1oe0 TTPDeoxynucleoside kinase / 0.675
1p72 THMThymidine kinase / 0.675
1zm7 TTPDeoxynucleoside kinase / 0.663
3ryk TYDdTDP-4-dehydrorhamnose 3,5-epimerase / 0.660
3khu UPGUDP-glucose 6-dehydrogenase 1.1.1.22 0.655
3o9z NADLipopolysaccaride biosynthesis protein wbpB / 0.654
1p6x THMThymidine kinase / 0.653
3ba6 AN2Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 3.6.3.8 0.651