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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1n2b PAF Pantothenate synthetase 6.3.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1n2b PAFPantothenate synthetase 6.3.2.1 0.871
1n2j PAFPantothenate synthetase 6.3.2.1 0.840
1n2h PAJPantothenate synthetase 6.3.2.1 0.813
1n2i PAJPantothenate synthetase 6.3.2.1 0.796
3ag6 PAJPantothenate synthetase / 0.785
3cow 52HPantothenate synthetase 6.3.2.1 0.773
3coy 53HPantothenate synthetase 6.3.2.1 0.713
4e5l DBHPolymerase acidic protein / 0.657