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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1mwm ADP Plasmid segregation protein ParM

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1mwm ADPPlasmid segregation protein ParM / 0.959
2zgy GDPPlasmid segregation protein ParM / 0.812
2zgz GNPPlasmid segregation protein ParM / 0.775
4a61 ANPPlasmid segregation protein ParM / 0.753
4eht ADP2-hydroxyisocaproyl-CoA dehydratase activator / 0.733
4ehu ANP2-hydroxyisocaproyl-CoA dehydratase activator / 0.727
4a62 ANPPlasmid segregation protein ParM / 0.720
3mn6 ATPActin-5C / 0.717
3chw ATPMajor actin / 0.716
4pki ATPActin, alpha skeletal muscle / 0.708
1c0f ATPMajor actin / 0.694
4pkg ATPActin, alpha skeletal muscle / 0.694
1qz5 ATPActin, alpha skeletal muscle / 0.693
4pkh ADPActin, alpha skeletal muscle / 0.693
1dej ATPMajor actin / 0.691
1mdu ATPActin, alpha skeletal muscle / 0.691
1wua ATPActin, alpha skeletal muscle / 0.691
1s22 ATPActin, alpha skeletal muscle / 0.689
1t44 ATPActin, alpha skeletal muscle / 0.689
2q36 ATPActin, alpha skeletal muscle / 0.689
4k41 ATPActin, alpha skeletal muscle / 0.689
3m1f ATPActin, alpha skeletal muscle / 0.684
3mn9 ATPActin-5C / 0.684
1eqy ATPActin, alpha skeletal muscle / 0.683
1kxp ATPActin, alpha skeletal muscle / 0.681
1nlv ATPMajor actin / 0.678
4b1v ATPActin, alpha skeletal muscle / 0.678
4cbx ATPActin-2 / 0.678
4pxz CLRP2Y purinoceptor 12 / 0.677
3daw ATPActin, alpha skeletal muscle / 0.676
3eks ATPActin-5C / 0.674
5ce3 ATPActin / 0.674
3m6g ATPActin, alpha skeletal muscle / 0.672
3a5o ATPMajor actin / 0.671
4m63 ATPActin-5C / 0.671
2fsn ADPArchaeal actin homolog / 0.665
3ffk ATPActin, alpha skeletal muscle / 0.662
4pl8 ATPActin, alpha skeletal muscle / 0.658
3mn7 ATPActin-5C / 0.656
4ymv ATPABC-type polar amino acid transport system, ATPase component / 0.655
1rfq ATPActin, alpha skeletal muscle / 0.654
2p9k ATPActin-related protein 2 / 0.653
3kji ADPCO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC / 0.651