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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1map KET Aspartate aminotransferase, mitochondrial 2.6.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1map KETAspartate aminotransferase, mitochondrial 2.6.1.1 1.232
1akb PPDAspartate aminotransferase, mitochondrial 2.6.1.1 1.135
1maq PGUAspartate aminotransferase, mitochondrial 2.6.1.1 1.064
1ivr CBAAspartate aminotransferase, mitochondrial 2.6.1.1 1.037
1akc PPEAspartate aminotransferase, mitochondrial 2.6.1.1 1.033
3qpg 3QPAspartate aminotransferase 2.6.1.1 0.933
1arh PPDAspartate aminotransferase 2.6.1.1 0.850
1ahg TYR_PLPAspartate aminotransferase 2.6.1.1 0.844
1arg PPDAspartate aminotransferase 2.6.1.1 0.843
1x28 PGUAspartate aminotransferase 2.6.1.1 0.829
4dbc 3QPAspartate aminotransferase 2.6.1.1 0.816
1cq8 PY6Aspartate aminotransferase 2.6.1.1 0.805
1cl2 PPGCystathionine beta-lyase MetC 4.4.1.8 0.773
1cq7 PY5Aspartate aminotransferase 2.6.1.1 0.773
4ge4 0KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.755
1oxo IK2Aspartate aminotransferase, mitochondrial 2.6.1.1 0.750
4ge9 0L0Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.744
4itx IN5Cystathionine beta-lyase MetC 4.4.1.8 0.707
4wlj IK2Kynurenine--oxoglutarate transaminase 1 2.6.1.7 0.702
1aka PLPAspartate aminotransferase, mitochondrial 2.6.1.1 0.698
4eb7 PLPCysteine desulfurase IscS 2 / 0.695
3vax PLPUncharacterized protein / 0.693
2gqn BLPCystathionine beta-lyase MetC 4.4.1.8 0.689
1cq6 PY4Aspartate aminotransferase 2.6.1.1 0.681
2fq6 P3FCystathionine beta-lyase MetC 4.4.1.8 0.681
4emy PLPAminotransferase class I and II / 0.676
4eb5 PLPCysteine desulfurase IscS 2 / 0.674
1dfo PLGSerine hydroxymethyltransferase 2.1.2.1 0.673
4wxf PLGSerine hydroxymethyltransferase / 0.669
4fl0 PLPAminotransferase ALD1, chloroplastic 2.6.1 0.663
5k8b PDG8-amino-3,8-dideoxy-alpha-D-manno-octulosonate transaminase / 0.663
2bwp PLG5-aminolevulinate synthase 2.3.1.37 0.662
4wxg 2BOSerine hydroxymethyltransferase / 0.661
3ele PLPAminotransferase / 0.660
1u08 PLPMethionine aminotransferase / 0.659
4w5k PLPAspartate aminotransferase, mitochondrial / 0.659
4d96 5PAD-cysteine desulfhydrase / 0.658
4ge7 0K5Kynurenine/alpha-aminoadipate aminotransferase, mitochondrial 2.6.1.39 0.651