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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1m8h H4B Nitric oxide synthase, inducible 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1m8h H4BNitric oxide synthase, inducible 1.14.13.39 0.787
1m8i H4BNitric oxide synthase, inducible 1.14.13.39 0.749
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3e67 H4BNitric oxide synthase, inducible 1.14.13.39 0.724
1m8e H4BNitric oxide synthase, inducible 1.14.13.39 0.721
1m9t H4BNitric oxide synthase, inducible 1.14.13.39 0.717
1m8d H4BNitric oxide synthase, inducible 1.14.13.39 0.710
1qom H4BNitric oxide synthase, inducible 1.14.13.39 0.678
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.678
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.677
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.676
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.675
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.675
3e6t H4BNitric oxide synthase, inducible 1.14.13.39 0.674
3nod H4BNitric oxide synthase, inducible 1.14.13.39 0.673
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.673
2nod H4BNitric oxide synthase, inducible 1.14.13.39 0.669
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.666
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.664
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.663
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.663
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.663
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.662
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.662
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.662
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.662
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.661
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.660
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.660
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.660
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.660
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.659
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.658
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.656
4blt APCNTPase P4 / 0.656
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.656
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.656
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.655
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.655
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.655
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.653
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.653
1qw5 H4BNitric oxide synthase, inducible 1.14.13.39 0.652
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.652
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.652