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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1m4d COA Aminoglycoside 2'-N-acetyltransferase 2.3.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1m4d COAAminoglycoside 2'-N-acetyltransferase 2.3.1 1.097
1m4i COAAminoglycoside 2'-N-acetyltransferase 2.3.1 0.885
3pgp ACOUncharacterized protein / 0.824
4ag7 COAGlucosamine 6-phosphate N-acetyltransferase / 0.805
2a4n COAAac(6')-Ii protein / 0.774
1kuv CA5Serotonin N-acetyltransferase / 0.768
4r3k COAN-alpha-acetyltransferase 2.3.1 0.763
1s3z COAAminoglycoside N(6')-acetyltransferase type 1 / 0.758
4qvt ACOAcetyltransferase YpeA 2.3.1 0.749
4jwp ACOGCN5-related N-acetyltransferase / 0.742
3dr8 ACOL-methionine sulfoximine/L-methionine sulfone acetyltransferase / 0.741
3s6f COAUncharacterized protein / 0.737
3sxn COAN-acetyltransferase Eis / 0.732
1s5k COAAminoglycoside N(6')-acetyltransferase type 1 / 0.728
2q4v ACODiamine acetyltransferase 2 2.3.1.57 0.728
1cjw COTSerotonin N-acetyltransferase / 0.727
3f8k COAUncharacterized protein / 0.724
1cm0 COAHistone acetyltransferase KAT2B 2.3.1.48 0.716
1mja COAHistone acetyltransferase ESA1 / 0.709
2cns ACORibosomal-protein-alanine acetyltransferase / 0.705
1b87 ACOAac(6')-Ii protein / 0.702
2r8v ACOAmino-acid acetyltransferase / 0.701
1l0c COTSerotonin N-acetyltransferase / 0.700
1p0h COAMycothiol acetyltransferase 2.3.1.189 0.700
1ib1 COTSerotonin N-acetyltransferase / 0.698
3vwe COAAlpha-tubulin N-acetyltransferase 1 / 0.698
2vbq BSJAminoglycoside N(6')-acetyltransferase type 1 / 0.697
3te4 ACODopamine N-acetyltransferase / 0.697
1fy7 COAHistone acetyltransferase ESA1 / 0.695
4kub COAUncharacterized protein / 0.693
2fxf ACODiamine acetyltransferase 1 / 0.688
2o28 COAGlucosamine 6-phosphate N-acetyltransferase / 0.687
5kf2 COAPredicted acetyltransferase / 0.687
5kf8 COAPredicted acetyltransferase / 0.685
3ryo ACON-acetyltransferase Eis / 0.679
4ava ACOAcetyltransferase Pat 2.3.1 0.676
5kgj ACOPredicted acetyltransferase / 0.675
4xnh ACON-terminal acetyltransferase A complex subunit NAT5 2.3.1 0.672
1kuy COTSerotonin N-acetyltransferase / 0.668
2bei ACODiamine acetyltransferase 2 2.3.1.57 0.668
5kf1 COAPredicted acetyltransferase / 0.665
2prb COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.664
4r87 COASpermidine N(1)-acetyltransferase / 0.662
2qir COAAminoglycoside 6-N-acetyltransferase type Ib11 / 0.661
2jev NHQDiamine acetyltransferase 1 / 0.659
5ag6 MYAGlycylpeptide N-tetradecanoyltransferase / 0.659
1bob ACOHistone acetyltransferase type B catalytic subunit / 0.658
1bo4 COAAminoglycoside-(3)-N-acetyltransferase / 0.657
2jdd ACOProbable acetyltransferase / 0.654
2rc4 ACOHistone acetyltransferase KAT6A / 0.654
2bsw CAOProbable acetyltransferase / 0.653
1kux CA3Serotonin N-acetyltransferase / 0.652
2jdc CAOProbable acetyltransferase / 0.651