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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1lm1 FMN Ferredoxin-dependent glutamate synthase 2 1.4.7.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1lm1 FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 1.150
1ofd FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 1.029
1llw FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.989
1ofe FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.948
1llz FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.883
4iql FMNEnoyl-(Acyl-carrier-protein) reductase II / 0.853
2z6i FMN2-nitropropane dioxygenase / 0.831
1ea0 FMNGlutamate synthase [NADPH] large chain 1.4.1.13 0.806
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.778
2gqa FMNNADH:flavin oxidoreductase Sye1 / 0.774
3hf3 FMNChromate reductase / 0.773
1z48 FMNNADPH dehydrogenase / 0.767
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.763
3l5l FMNXenobiotic reductase / 0.758
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.751
1h7w FMNDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.744
1z44 FMNNADPH dehydrogenase / 0.740
4utk FNRXenobiotic reductase / 0.740
2gou FMNNADH:flavin oxidoreductase Sye1 / 0.735
1jub FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.733
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.730
4yx6 FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.730
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.729
1jue FMNDihydroorotate dehydrogenase A (fumarate) 1.3.98.1 0.728
2djx FMNDihydroorotate dehydrogenase (fumarate) 1.3.98.1 0.728
3gr8 FMNNADPH dehydrogenase / 0.728
4yco FMNtRNA-dihydrouridine(16) synthase / 0.725
4ycp FMNtRNA-dihydrouridine(16) synthase / 0.724
2h8x FMNXenA / 0.720
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.720
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 0.716
4cw5 FMNDfnA / 0.709
3bw3 FMNPutative 2-nitropropane dioxygenase / 0.706
3n19 FNRXenobiotic reductase / 0.703
4utl FNRXenobiotic reductase / 0.698
3p82 FMNPentaerythritol tetranitrate reductase / 0.694
4rnx FMNNADPH dehydrogenase 1 1.6.99.1 0.688
5cpm FNRNADH:flavin oxidoreductase / 0.685
3axb FADPutative oxidoreductase / 0.682
2yqu FADDihydrolipoyl dehydrogenase / 0.680
3p74 FMNPentaerythritol tetranitrate reductase / 0.680
1z41 FMNNADPH dehydrogenase / 0.678
4jic FMNGTN Reductase / 0.678
4kuk RBFPutative blue-light photoreceptor / 0.676
3p67 FMNPentaerythritol tetranitrate reductase / 0.674
3g5m FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.673
4q4k FMNUncharacterized protein / 0.673
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.671
1vyr FMNPentaerythritol tetranitrate reductase / 0.670
3bw2 FMNPutative 2-nitropropane dioxygenase / 0.668
3bw4 FMNPutative 2-nitropropane dioxygenase / 0.668
1ep3 FMNDihydroorotate dehydrogenase B (NAD(+)), catalytic subunit 1.3.1.14 0.667
2q0k FADThioredoxin reductase 1.8.1.9 0.667
3aty FMNProstaglandin F2a synthase / 0.667
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.667
4df2 FMNNADPH dehydrogenase / 0.666
3ntd FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.665
4m5p FMNNADPH dehydrogenase / 0.664
2gh5 FADGlutathione reductase, mitochondrial 1.8.1.7 0.662
2ohj FMNType A flavoprotein FprA 1 0.662
2eq7 FADDihydrolipoyl dehydrogenase / 0.661
4mih FADPyranose 2-oxidase 1.1.3.10 0.660
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.659
2gjl FMNNitronate monooxygenase 1.13.12.16 0.659
2f5z FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.658
2g37 FADProline dehydrogenase / 0.658
4e2b FMNDehydrogenase / 0.658
1t0i FMNNAD(P)H-dependent FMN reductase LOT6 / 0.657
3rnm FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.657
1h50 FMNPentaerythritol tetranitrate reductase / 0.656
4ef8 FMNDihydroorotate dehydrogenase (fumarate) / 0.656
1zmc FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.655
4zvl FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.655
2x3n FADProbable FAD-dependent monooxygenase / 0.654
3ish FADThioredoxin reductase 1.8.1.9 0.653
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.653
2j6x FMNLactate oxidase / 0.652
4aws FMNNADH:flavin oxidoreductase Sye1 / 0.652
1h51 FMNPentaerythritol tetranitrate reductase / 0.651
4nmc FADBifunctional protein PutA / 0.651
3djj FADGlutathione reductase, mitochondrial 1.8.1.7 0.650
4ocg FADFAD-dependent pyridine nucleotide-disulphide oxidoreductase / 0.650
4opd FDAConserved Archaeal protein / 0.650