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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1lke DOG Bilin-binding protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1lke DOGBilin-binding protein / 1.132
1lnm DTXBilin-binding protein / 0.972
2qpy DHTAndrogen receptor / 0.697
2k62 ITLFatty acid-binding protein, liver / 0.681
4q0a 4OAVitamin D3 receptor A / 0.681
2ab2 SNLMineralocorticoid receptor / 0.678
2pnu ENMAndrogen receptor / 0.677
3w5p 4OAVitamin D3 receptor / 0.673
2abi 1CAMineralocorticoid receptor / 0.667
1kdm DHTSex hormone-binding globulin / 0.666
1kdk DHTSex hormone-binding globulin / 0.658
2aa6 STRMineralocorticoid receptor / 0.657
3cot STR3-oxo-5-beta-steroid 4-dehydrogenase / 0.657
2mm3 CHOGastrotropin / 0.656