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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1lb9 DNQ Glutamate receptor 2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1lb9 DNQGlutamate receptor 2 / 0.800
3b7d CNIGlutamate receptor 2 / 0.754
4l17 DNQGlutamate receptor 2 / 0.742
4kfq KFQGlutamate receptor ionotropic, NMDA 1 / 0.741
1ftl DNQGlutamate receptor 2 / 0.728
4f1y CNIGlutamate receptor 3 / 0.705