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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1kws UGA Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1kws UGAGalactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 / 1.266
1foa UD1Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase 2.4.1.101 0.704
4y9x UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.676
2z86 UGAChondroitin synthase 2.4.1.175 0.674
2wvj TTPThymidine kinase, cytosolic 2.7.1.21 0.666
2vfz UPFN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.660
3b3f SAHHistone-arginine methyltransferase CARM1 / 0.660
4y6u UPGGlucosyl-3-phosphoglycerate synthase 2.4.1.266 0.660
2apc UDMAlpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase 2.4.1.101 0.658
1ijj ATPActin, alpha skeletal muscle / 0.656
2y4l GDPUncharacterized protein / 0.656
1jq5 NADGlycerol dehydrogenase 1.1.1.6 0.654
1s4o GDPGlycolipid 2-alpha-mannosyltransferase / 0.653
2vp4 DCPDeoxynucleoside kinase / 0.652
5dx8 SFGHistone-arginine methyltransferase CARM1 / 0.650