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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1kfb IGP Tryptophan synthase alpha chain

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1kfb IGPTryptophan synthase alpha chain / 0.986
2rh9 IGPTryptophan synthase alpha chain / 0.922
1qoq IGPTryptophan synthase alpha chain / 0.919
2rhg IGPTryptophan synthase alpha chain / 0.849
1a5s FIPTryptophan synthase alpha chain / 0.783
1a50 FIPTryptophan synthase alpha chain / 0.767
1k8y 13PTryptophan synthase alpha chain / 0.727
2clm F6FTryptophan synthase alpha chain / 0.721
1a5b IGPTryptophan synthase alpha chain / 0.709
1fuy FIPTryptophan synthase alpha chain / 0.705
1kfc IPLTryptophan synthase alpha chain / 0.691
2clf F6FTryptophan synthase alpha chain / 0.672
2trs IPLTryptophan synthase alpha chain / 0.656
3oix FMNDihydroorotate dehydrogenase / 0.651