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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1jwt BLI Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1jwt BLIProthrombin 3.4.21.5 0.977
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1c4u IH1Prothrombin 3.4.21.5 0.700
2zhq 27UProthrombin 3.4.21.5 0.697
2zg0 50UProthrombin 3.4.21.5 0.692
2zfr 46UProthrombin 3.4.21.5 0.679
1c4v IH2Prothrombin 3.4.21.5 0.678
3biv 11UProthrombin 3.4.21.5 0.664
4e5f 0N7Polymerase acidic protein / 0.660
2bdy UNBProthrombin 3.4.21.5 0.659
2a2x NA9Prothrombin 3.4.21.5 0.657
4bao MVFProthrombin 3.4.21.5 0.657
1ta2 176Prothrombin 3.4.21.5 0.656
2bxt C2DProthrombin 3.4.21.5 0.655
3hat GLY_VAL_ARG_RNGProthrombin 3.4.21.5 0.653
3f68 91UProthrombin 3.4.21.5 0.652