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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1jra FAD FAD-linked sulfhydryl oxidase ERV2 1.8.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1jra FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 1.326
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 1.129
3u5s FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.073
3u2l FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.013
3tk0 FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.996
3u2m FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.977
4ldk FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.961
3mbg FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.918
4e0h FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.914
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.900
3lli FADSulfhydryl oxidase 1 1.8.3.2 0.899
2hj3 FADFAD-linked sulfhydryl oxidase ERV1 / 0.898
3llk FADSulfhydryl oxidase 1 1.8.3.2 0.879
3w4y FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.854
3r7c FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.847
3t58 FADSulfhydryl oxidase 1 1.8.3.2 0.837
3t59 FADSulfhydryl oxidase 1 1.8.3.2 0.819
4e0i FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.790
3gwl FADFAD-linked sulfhydryl oxidase 1.8.3.2 0.756
1rp4 FADEndoplasmic oxidoreductin-1 1.8.4 0.745
4p2l FADSulfhydryl oxidase 1 1.8.3.2 0.744
3td7 FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.722
3ust FADAcMNPV orf92 / 0.668
1gte FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.663
4opg FDAConserved Archaeal protein / 0.663
4opl FDAConserved Archaeal protein / 0.655
1rq1 FADEndoplasmic oxidoreductin-1 1.8.4 0.651
1q1w FADPutidaredoxin reductase 1.18.1.5 0.650