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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1jr8 FAD FAD-linked sulfhydryl oxidase ERV2 1.8.3.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1jr8 FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 1.378
1jra FADFAD-linked sulfhydryl oxidase ERV2 1.8.3.2 1.129
3u5s FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.035
3u2l FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.012
3tk0 FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.009
3mbg FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 1.003
3w4y FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.989
4ldk FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.981
3u2m FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.964
4e0h FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.963
3gwl FADFAD-linked sulfhydryl oxidase 1.8.3.2 0.957
2hj3 FADFAD-linked sulfhydryl oxidase ERV1 / 0.953
3lli FADSulfhydryl oxidase 1 1.8.3.2 0.942
3llk FADSulfhydryl oxidase 1 1.8.3.2 0.906
3t58 FADSulfhydryl oxidase 1 1.8.3.2 0.902
3r7c FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.871
1oqc FADFAD-linked sulfhydryl oxidase ALR 1.8.3.2 0.850
4e0i FADMitochondrial FAD-linked sulfhydryl oxidase ERV1 1.8.3.2 0.834
4p2l FADSulfhydryl oxidase 1 1.8.3.2 0.831
3t59 FADSulfhydryl oxidase 1 1.8.3.2 0.765
3td7 FADProbable FAD-linked sulfhydryl oxidase R596 1.8.3.2 0.764
3qzy FADFAD-linked sulfhydryl oxidase / 0.753
3ust FADAcMNPV orf92 / 0.749
1rp4 FADEndoplasmic oxidoreductin-1 1.8.4 0.737
3m31 FADEndoplasmic oxidoreductin-1 1.8.4 0.696
4opg FDAConserved Archaeal protein / 0.689
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.665
2gqw FADFerredoxin reductase / 0.665
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.661
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.661
4hnb FMNLOV protein / 0.657
4opu FDAConserved Archaeal protein / 0.657
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.656
1rq1 FADEndoplasmic oxidoreductin-1 1.8.4 0.655
4h4v FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.655
1fea FADTrypanothione reductase 1.8.1.12 0.654
1cqx FADFlavohemoprotein / 0.653
2pd8 FADVivid PAS protein VVD / 0.651
4h4r FADBiphenyl dioxygenase ferredoxin reductase subunit / 0.650