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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1jhq PMO Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2.4.2.21

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1jhq PMONicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2.4.2.21 0.930
1d0v RBZNicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2.4.2.21 0.907
1l4e RBZNicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2.4.2.21 0.882
1l5m 7RANicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2.4.2.21 0.861
1jha AAMNicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2.4.2.21 0.843
1l5k 1RBNicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2.4.2.21 0.841
1jho RMBNicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2.4.2.21 0.832
1l5l 7RPNicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2.4.2.21 0.829
1l5o NCNNicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2.4.2.21 0.815
1jhr P2PNicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2.4.2.21 0.776
1l4h NCNNicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2.4.2.21 0.776
1l4k NCNNicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 2.4.2.21 0.756