2.000 Å
X-ray
2001-06-28
Name: | Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
---|---|
ID: | COBT_SALTY |
AC: | Q05603 |
Organism: | Salmonella typhimurium |
Reign: | Bacteria |
TaxID: | 99287 |
EC Number: | 2.4.2.21 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 17.635 |
---|---|
Number of residues: | 35 |
Including | |
Standard Amino Acids: | 31 |
Non Standard Amino Acids: | 1 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.939 | 455.625 |
% Hydrophobic | % Polar |
---|---|
51.11 | 48.89 |
According to VolSite |
HET Code: | P2P |
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Formula: | C10H11N4O8P |
Molecular weight: | 346.190 g/mol |
DrugBank ID: | DB02905 |
Buried Surface Area: | 66.18 % |
Polar Surface area: | 195.75 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 11 |
H-Bond Donors: | 3 |
Rings: | 3 |
Aromatic rings: | 2 |
Anionic atoms: | 2 |
Cationic atoms: | 0 |
Rule of Five Violation: | 1 |
Rotatable Bonds: | 4 |
X | Y | Z |
---|---|---|
57.9279 | 40.4268 | 10.568 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
N3 | NE2 | GLN- 88 | 3.04 | 161.43 | H-Bond (Protein Donor) |
O2' | OE1 | GLU- 174 | 2.57 | 155.61 | H-Bond (Ligand Donor) |
O3' | N | GLY- 176 | 2.82 | 167.29 | H-Bond (Protein Donor) |
O3P | N | ALA- 178 | 2.72 | 160.47 | H-Bond (Protein Donor) |
O1P | N | THR- 180 | 3.04 | 155.47 | H-Bond (Protein Donor) |
O1P | OG1 | THR- 180 | 2.66 | 163.67 | H-Bond (Protein Donor) |
C5' | CG2 | THR- 180 | 3.23 | 0 | Hydrophobic |
O2P | N | ALA- 203 | 2.85 | 173.23 | H-Bond (Protein Donor) |
O6' | N | ALA- 203 | 3.38 | 122.12 | H-Bond (Protein Donor) |
O2P | O | HOH- 1040 | 2.63 | 170.95 | H-Bond (Protein Donor) |