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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1isj NMN ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2 3.2.2.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1isj NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2 3.2.2.6 1.003
3dzk NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.733
3i9j NFDADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.691
3dzj NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.689
3dzi RGTADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.688
3zwx AV1ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.684
3zwo G2QADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.672
1yf3 SAHDNA adenine methylase / 0.671
2i65 NADADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.657
3i9j AVVADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.657
4kxl 6C62'-deoxynucleoside 5'-phosphate N-hydrolase 1 / 0.654