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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1icv FMN Oxygen-insensitive NAD(P)H nitroreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 1.282
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 1.218
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 1.167
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 1.157
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 1.155
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 1.154
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 1.140
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 1.140
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 1.138
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 1.100
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 1.039
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 1.037
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 1.028
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 1.000
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.978
3ge6 FMNNitroreductase / 0.948
3x21 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.945
3koq FMNPutative nitroreductase / 0.937
2wzv FMNNitroreductase NfnB / 0.920
3of4 FMNNitroreductase / 0.894
2wzw FMNNitroreductase NfnB / 0.890
3pxv FMNNitroreductase / 0.853
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.830
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.815
3eo8 FMNPutative nitroreductase / 0.799
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 0.797
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.797
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.776
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.776
4qly FMNEnone reductase CLA-ER / 0.773
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.761
3e39 FMNNitroreductase / 0.756
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.746
4xoo FMNCoenzyme F420:L-glutamate ligase / 0.738
3hj9 FMNUncharacterized protein / 0.735
2fre FMNNAD(P)H-flavin oxidoreductase / 0.719
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.710
2ifa FMNUncharacterized protein / 0.696
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.694
4ttb FMNIodotyrosine deiodinase 1 / 0.684
3pft FMNFlavin reductase / 0.683
4f07 FADStyrene monooxygenase component 2 / 0.683
1usc FMNMonooxygenase / 0.682
4hnb FMNLOV protein / 0.679
5j3w FMNSensory box protein / 0.678
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.677
4eer FMNPhototropin-2 2.7.11.1 0.677
2d29 FADAcyl-CoA dehydrogenase / 0.676
2bkj FMNNADPH-flavin oxidoreductase / 0.674
4hj3 FMNLOV protein / 0.674
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.672
2wes FADTryptophan 5-halogenase / 0.668
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.666
4ttc FMNIodotyrosine deiodinase 1 / 0.666
1a8p FADFerredoxin--NADP reductase / 0.664
3bm1 FMNPutative NAD(P)H nitroreductase YdjA / 0.663
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.661
4l82 FMNUncharacterized protein / 0.660
3w2e FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.657
3qbv GDPCell division control protein 42 homolog / 0.656
2z6c FMNPhototropin-1 2.7.11.1 0.655
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.655
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.654
1amo FADNADPH--cytochrome P450 reductase / 0.653
1eje FMNProtein MTH_152 / 0.652
2o12 FMNChorismate synthase / 0.651
2oz0 FMNCytochrome b2, mitochondrial 1.1.2.3 0.651