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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1i6k TYM Tryptophan--tRNA ligase 6.1.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1i6k TYMTryptophan--tRNA ligase 6.1.1.2 1.343
1i6l TYMTryptophan--tRNA ligase 6.1.1.2 1.269
2yy5 WSATryptophan--tRNA ligase 6.1.1.2 0.879
1r6t TYMTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.728
3kt3 TYMTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.728
3jxe TYMTryptophan--tRNA ligase / 0.724
3qtt ANPPantothenate synthetase / 0.700
3zxi TYATyrosine--tRNA ligase, mitochondrial 6.1.1.1 0.669
1n2h PAJPantothenate synthetase 6.3.2.1 0.667
3coy 53HPantothenate synthetase 6.3.2.1 0.659
2h2a DNDProbable nicotinate-nucleotide adenylyltransferase / 0.655
3cow 52HPantothenate synthetase 6.3.2.1 0.655
4j75 TYMTryptophan--tRNA ligase / 0.654
1vbn YSATyrosine--tRNA ligase 6.1.1.1 0.652
2pid YSATyrosine--tRNA ligase, mitochondrial 6.1.1.1 0.652
1r6u TYMTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.650
2q1s NAIPutative nucleotide sugar epimerase/ dehydratase / 0.650