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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1hzz NAD NAD(P) transhydrogenase subunit alpha part 1 1.6.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1hzz NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.922
1ptj SNDNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.794
1u28 NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.723
1l7e NAINAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.717
1p1h NADInositol-3-phosphate synthase 5.5.1.4 0.681
2oo5 TXDNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.679
1jki NAIInositol-3-phosphate synthase 5.5.1.4 0.677
2o07 MTASpermidine synthase 2.5.1.16 0.674
2oor NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.673
4xcx SAHSmall RNA 2'-O-methyltransferase / 0.664
1uxj NADMalate dehydrogenase / 0.663
4yuz S4MSpermidine synthase, putative / 0.663
2yqz SAMUncharacterized protein / 0.660
2p35 SAHTrans-aconitate 2-methyltransferase / 0.659
3epp SFGmRNA cap guanine-N7 methyltransferase 2.1.1.56 0.658
5lc1 NADL-threonine 3-dehydrogenase / 0.658
3d4p NADL-lactate dehydrogenase 1 1.1.1.27 0.657
4wlu NADMalate dehydrogenase, mitochondrial 1.1.1.37 0.657
2qe6 SAMUncharacterized protein / 0.656
4nec SAHPutative SAM-dependent methyltransferase / 0.656
1ri3 SAHmRNA cap guanine-N7 methyltransferase 2.1.1.56 0.655
3grv ADNProbable ribosomal RNA small subunit methyltransferase A / 0.655
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.654
1lld NADL-lactate dehydrogenase 2 1.1.1.27 0.653
1ie3 NADMalate dehydrogenase / 0.652
2dfd NADMalate dehydrogenase, mitochondrial 1.1.1.37 0.652
2zth SAMCatechol O-methyltransferase 2.1.1.6 0.652
3aw9 NADNAD-dependent epimerase/dehydratase / 0.652
2nxe SAMRibosomal protein L11 methyltransferase 2.1.1 0.651
4ymg SAMPutative SAM-dependent O-methyltranferase / 0.651
1f8g NADNAD(P) transhydrogenase subunit alpha part 1 1.6.1.2 0.650