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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1h5n PGD Dimethyl sulfoxide/trimethylamine N-oxide reductase 1.7.2.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1h5n PGDDimethyl sulfoxide/trimethylamine N-oxide reductase 1.7.2.3 1.425
4ydd MD1DMSO reductase family type II enzyme, molybdopterin subunit / 0.722
5ch7 MD1DMSO reductase family type II enzyme, molybdopterin subunit / 0.722
5e7o MD1DMSO reductase family type II enzyme, molybdopterin subunit / 0.713
1g8j MGDArsenite oxidase subunit AioA 1.20.9.1 0.684
1kqg MGDFormate dehydrogenase, nitrate-inducible, major subunit 1.1.5.6 0.663