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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1h1w ATP 3-phosphoinositide-dependent protein kinase 1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1h1w ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.831
2biy ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.776
3hrc ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.766
4rqv ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.726
4xx9 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.702
3hrf ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.688
4ct2 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.681
4rqk ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.674
5ack ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.669
4rrv ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.662
4ct1 ATP3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.659
4cki ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.656
3gu4 ANPDeath-associated protein kinase 1 2.7.11.1 0.655
4ckj ADNProto-oncogene tyrosine-protein kinase receptor Ret 2.7.10.1 0.654
3gu6 ADPDeath-associated protein kinase 1 2.7.11.1 0.651