Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1gj5 130 Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1gj5 130Prothrombin 3.4.21.5 1.017
1o2g 696Prothrombin 3.4.21.5 0.941
1gj4 132Prothrombin 3.4.21.5 0.847
4e5i 0N9Polymerase acidic protein / 0.744
2v3h I25Prothrombin 3.4.21.5 0.720
4ayv 9MQProthrombin 3.4.21.5 0.707
1c5n ESIProthrombin 3.4.21.5 0.705
1ghv 120Prothrombin 3.4.21.5 0.696
4ayy 9MXProthrombin 3.4.21.5 0.696
1oyt FSNProthrombin 3.4.21.5 0.677
3biv 11UProthrombin 3.4.21.5 0.669
1ny2 ARG_PRO_PRO_GLYProthrombin 3.4.21.5 0.667
1c1w BAHProthrombin 3.4.21.5 0.663
4ax9 N5NProthrombin 3.4.21.5 0.660
4fui UI3Urokinase-type plasminogen activator 3.4.21.73 0.654
1o5g CR9Prothrombin 3.4.21.5 0.653
1c1u BAIProthrombin 3.4.21.5 0.651