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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1g38 NEA Modification methylase TaqI 2.1.1.72

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1g38 NEAModification methylase TaqI 2.1.1.72 0.886
2ih2 NEAModification methylase TaqI 2.1.1.72 0.867
2ih5 NEAModification methylase TaqI 2.1.1.72 0.850
2np7 NEAModification methylase TaqI 2.1.1.72 0.846
2ibt NEAModification methylase TaqI 2.1.1.72 0.845
2np6 NEAModification methylase TaqI 2.1.1.72 0.790
1aqi SAHModification methylase TaqI 2.1.1.72 0.725
1ve3 SAMUncharacterized protein / 0.710
5je4 SAHMethyl transferase / 0.702
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.690
2bzg SAHThiopurine S-methyltransferase 2.1.1.67 0.685
4obw SAM2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial / 0.685
3rw9 DSHSpermidine synthase 2.5.1.16 0.677
1sqf SAMRibosomal RNA small subunit methyltransferase B 2.1.1.176 0.676
2o06 MTASpermidine synthase 2.5.1.16 0.674
2okc SAMProbable type I restriction enzyme BthVORF4518P M protein 2.1.1.72 0.674
4yv2 S4MSpermidine synthase, putative / 0.673
1nw3 SAMHistone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.671
3grv ADNProbable ribosomal RNA small subunit methyltransferase A / 0.671
1qao SAMrRNA adenine N-6-methyltransferase 2.1.1.184 0.669
2f8l SAMLmo1582 protein / 0.667
3a4t SFGtRNA (cytosine(48)-C(5))-methyltransferase 2.1.1 0.667
4fzv SAM5-methylcytosine rRNA methyltransferase NSUN4 2.1.1 0.667
1qaq SFGrRNA adenine N-6-methyltransferase 2.1.1.184 0.666
3v97 SAHRibosomal RNA large subunit methyltransferase K/L 2.1.1.173 0.666
1mht SAHModification methylase HhaI 2.1.1.37 0.664
5dx8 SFGHistone-arginine methyltransferase CARM1 / 0.663
3b3f SAHHistone-arginine methyltransferase CARM1 / 0.662
1nw6 SFGModification methylase RsrI 2.1.1.72 0.661
5dxj SFGHistone-arginine methyltransferase CARM1 / 0.661
1skm SAHModification methylase HhaI 2.1.1.37 0.660
7mht SAHModification methylase HhaI 2.1.1.37 0.658
3tm4 SAMUncharacterized protein / 0.657
4n48 SAMCap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 2.1.1.57 0.655
4o29 SAHProtein-L-isoaspartate O-methyltransferase / 0.655
1z3c SA8mRNA cap guanine-N7 methyltransferase 2.1.1.56 0.654
3a27 SAMtRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase / 0.654
3mht SAHModification methylase HhaI 2.1.1.37 0.654
3qow SAMHistone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.654
3tlj SAHUncharacterized protein / 0.654
4blw SAHRibosomal RNA large subunit methyltransferase J / 0.653
2o07 MTASpermidine synthase 2.5.1.16 0.652
4hc4 SAHProtein arginine N-methyltransferase 6 / 0.652
2uyh SAHModification methylase HhaI 2.1.1.37 0.651
4htf SAMtRNA 5-carboxymethoxyuridine methyltransferase / 0.651
2yxl SFG450aa long hypothetical fmu protein / 0.650
3ldg SAHUncharacterized protein / 0.650