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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1fcb FMN Cytochrome b2, mitochondrial 1.1.2.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1fcb FMNCytochrome b2, mitochondrial 1.1.2.3 1.252
1kbi FMNCytochrome b2, mitochondrial 1.1.2.3 1.184
1kbj FMNCytochrome b2, mitochondrial 1.1.2.3 1.171
1szf FMNCytochrome b2, mitochondrial 1.1.2.3 1.164
1szg FNSCytochrome b2, mitochondrial 1.1.2.3 0.922
4yl2 FMNLactate oxidase / 0.917
3giy FMN(S)-mandelate dehydrogenase 1.1.99.31 0.908
2nli FMNLactate oxidase / 0.904
1qcw FNSCytochrome b2, mitochondrial 1.1.2.3 0.900
2j6x FMNLactate oxidase / 0.896
2zfa FMNLactate oxidase / 0.887
4rje FNRLactate oxidase / 0.876
2du2 FMNLactate oxidase / 0.860
2oz0 FMNCytochrome b2, mitochondrial 1.1.2.3 0.860
2hsa FMN12-oxophytodienoate reductase 3 1.3.1.42 0.851
2e77 FMNLactate oxidase / 0.826
3hgs FMN12-oxophytodienoate reductase 3 1.3.1.42 0.826
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.750
2z6i FMN2-nitropropane dioxygenase / 0.738
4qnw FMNChanoclavine-I aldehyde reductase easA / 0.737
3l5l FMNXenobiotic reductase / 0.731
2h8x FMNXenA / 0.729
4uth FMNXenobiotic reductase / 0.727
4utm FNRXenobiotic reductase / 0.727
2hs8 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.719
3p82 FMNPentaerythritol tetranitrate reductase / 0.719
3l67 FMNXenobiotic reductase / 0.716
1gox FMNPeroxisomal (S)-2-hydroxy-acid oxidase 1.1.3.15 0.712
1ofe FMNFerredoxin-dependent glutamate synthase 2 1.4.7.1 0.710
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.710
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.704
1bwl FMNNADPH dehydrogenase 1 1.6.99.1 0.698
2gjl FMNNitronate monooxygenase 1.13.12.16 0.687
4qai FMNNADPH dehydrogenase / 0.684
4utk FNRXenobiotic reductase / 0.680
3p62 FMNPentaerythritol tetranitrate reductase / 0.674
1h7w FMNDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.667
4dtj TTPDNA-directed DNA polymerase / 0.663
3ne6 DCPDNA-directed DNA polymerase / 0.662
4z9r FMNOmega-3 polyunsaturated fatty acid synthase subunit PfaD / 0.661
4m42 ATPDNA-directed DNA polymerase / 0.658
4nmc FADBifunctional protein PutA / 0.650