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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ewy FAD Ferredoxin--NADP reductase 1.18.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ewy FADFerredoxin--NADP reductase 1.18.1.2 1.396
1ogi FADFerredoxin--NADP reductase 1.18.1.2 1.050
1gjr FADFerredoxin--NADP reductase 1.18.1.2 1.048
1que FADFerredoxin--NADP reductase 1.18.1.2 1.042
4c43 FADFerredoxin--NADP reductase 1.18.1.2 1.037
3w5u FADFerredoxin / 1.028
1go2 FADFerredoxin--NADP reductase 1.18.1.2 1.024
1ogj FADFerredoxin--NADP reductase 1.18.1.2 1.024
3mhp FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 1.024
1qh0 FADFerredoxin--NADP reductase 1.18.1.2 1.022
1e62 FADFerredoxin--NADP reductase 1.18.1.2 1.015
3zbt FADFerredoxin--NADP reductase 1.18.1.2 1.015
1e64 FADFerredoxin--NADP reductase 1.18.1.2 1.011
1h42 FADFerredoxin--NADP reductase 1.18.1.2 1.005
1e63 FADFerredoxin--NADP reductase 1.18.1.2 1.004
1bx0 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.997
1qgy FADFerredoxin--NADP reductase 1.18.1.2 0.997
4af7 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.992
1fnb FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.988
3vo2 FADFerredoxin--NADP reductase / 0.985
3zc3 FADFerredoxin--NADP reductase 1.18.1.2 0.984
1bx1 FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.983
1gr1 FADFerredoxin--NADP reductase 1.18.1.2 0.982
1fnd FADFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.981
1qg0 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.976
2b5o FADFerredoxin--NADP reductase 1.18.1.2 0.975
1fnc FDAFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.974
1b2r FADFerredoxin--NADP reductase 1.18.1.2 0.966
1gaw FADFerredoxin / 0.958
1h85 FADFerredoxin--NADP reductase 1.18.1.2 0.958
4bpr FADFerredoxin--NADP reductase 1.18.1.2 0.944
1qgz FADFerredoxin--NADP reductase 1.18.1.2 0.940
2vyq FADFerredoxin--NADP reductase 1.18.1.2 0.940
1w34 FADFerredoxin--NADP reductase 1.18.1.2 0.929
1bjk FADFerredoxin--NADP reductase 1.18.1.2 0.926
4af6 FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.909
2rc5 FADFerredoxin--NADP reductase / 0.908
1gaq FADFerredoxin / 0.898
2rc6 FADFerredoxin--NADP reductase / 0.894
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.859
1w87 FADFerredoxin--NADP reductase 1.18.1.2 0.847
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.847
2xnc FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic 1.18.1.2 0.846
1sm4 FADFerredoxin--NADP reductase / 0.833
3qfs FADNADPH--cytochrome P450 reductase / 0.827
1cqx FADFlavohemoprotein / 0.823
4uaj FADNa(+)-translocating NADH-quinone reductase subunit F / 0.820
3qfr FADNADPH--cytochrome P450 reductase / 0.819
1tll FADNitric oxide synthase, brain 1.14.13.39 0.816
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.814
3w5h FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.802
1i7p FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.794
1ja1 FADNADPH--cytochrome P450 reductase / 0.794
3qfc FADNADPH--cytochrome P450 reductase / 0.787
1ja0 FADNADPH--cytochrome P450 reductase / 0.763
3qe2 FADNADPH--cytochrome P450 reductase / 0.762
1krh FADBenzoate 1,2-dioxygenase electron transfer component 1.18.1.3 0.756
1amo FADNADPH--cytochrome P450 reductase / 0.751
4y7c FADNADPH--cytochrome P450 reductase / 0.751
1umk FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.744
3ojw FADNADPH--cytochrome P450 reductase / 0.737
4y9r FADNADPH--cytochrome P450 reductase / 0.735
4yau FADNADPH--cytochrome P450 reductase / 0.731
3qft FADNADPH--cytochrome P450 reductase / 0.728
4yao FADNADPH--cytochrome P450 reductase / 0.726
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.723
4y9u FADNADPH--cytochrome P450 reductase / 0.723
3gdp FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.722
4yaf FADNADPH--cytochrome P450 reductase / 0.721
1f20 FADNitric oxide synthase, brain 1.14.13.39 0.714
2gpj FADSiderophore-interacting protein / 0.714
2cnd FADNitrate reductase [NADH] 1.7.1.1 0.710
1w35 FADFerredoxin--NADP reductase 1.18.1.2 0.709
2bf4 FADNADPH--cytochrome P450 reductase / 0.705
1rz1 FADPhenol 2-hydroxylase component B / 0.703
3ojx FADNADPH--cytochrome P450 reductase / 0.703
3fpk FADFerredoxin-NADP reductase / 0.698
2bn4 FADNADPH--cytochrome P450 reductase / 0.695
3qvp FADGlucose oxidase 1.1.3.4 0.692
4f07 FADStyrene monooxygenase component 2 / 0.690
3t37 FADPyridoxine 4-oxidase / 0.689
2b9y FADPutative aminooxidase / 0.687
2b9w FADPutative aminooxidase / 0.685
3qvr FADGlucose oxidase 1.1.3.4 0.685
3in6 FMNUncharacterized protein / 0.683
4k1x FADNADPH:ferredoxin reductase / 0.683
1j9z FADNADPH--cytochrome P450 reductase / 0.680
2iml FMNUncharacterized protein / 0.680
3hjk FADVivid PAS protein VVD / 0.676
5j60 FADThioredoxin reductase / 0.673
2bac FADPutative aminooxidase / 0.672
2pd7 FADVivid PAS protein VVD / 0.672
2b9x FADPutative aminooxidase / 0.669
4eer FMNPhototropin-2 2.7.11.1 0.669
2ign FADPyranose 2-oxidase / 0.668
3gyi FADCholesterol oxidase 1.1.3.6 0.668
4ybn FADFlavin-nucleotide-binding protein / 0.668
2r6h FADNa(+)-translocating NADH-quinone reductase subunit F / 0.666
3w2f FADNADH-cytochrome b5 reductase 3 1.6.2.2 0.666
2i0z FADNAD(FAD)-utilizing dehydrogenases / 0.665
4ees FMNPhototropin-2 2.7.11.1 0.665
1gpe FADGlucose oxidase 1.1.3.4 0.664
4u2t FADCholesterol oxidase 1.1.3.6 0.663
3b6d FAECholesterol oxidase 1.1.3.6 0.662
4udq FAD5-(hydroxymethyl)furfural oxidase / 0.662
5af7 FADAcyl-CoA dehydrogenase / 0.662
2qcu FADAerobic glycerol-3-phosphate dehydrogenase 1.1.5.3 0.661
2gmh FADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial 1.5.5.1 0.660
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.659
1cbo FADCholesterol oxidase 1.1.3.6 0.658
3r7k FDAProbable acyl CoA dehydrogenase / 0.658
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.656
2wzv FMNNitroreductase NfnB / 0.656
3mkh FADNitroalkane oxidase / 0.656
1a8p FADFerredoxin--NADP reductase / 0.655
2ohj FMNType A flavoprotein FprA 1 0.655
3lsh FADPyranose 2-oxidase / 0.655
4rhe FMNFlavin prenyltransferase UbiX / 0.654
2dw4 FADLysine-specific histone demethylase 1A 1 0.653
3lsi FADPyranose 2-oxidase / 0.653
1gth FADDihydropyrimidine dehydrogenase [NADP(+)] 1.3.1.2 0.651
1h83 FADPolyamine oxidase 1.5.3.14 0.651
2bab FADPutative aminooxidase / 0.651