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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1egc CO8 Medium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1egc CO8Medium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 1.333
3mde CO8Medium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.730
2uxw TH3Very long-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.9 0.674
2ix5 CAAAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.669
3mpi GRAGlutaryl-CoA dehydrogenase 1.3.99.32 0.659