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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1e7y NDP Glucose-6-phosphate 1-dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1e7y NDPGlucose-6-phosphate 1-dehydrogenase / 0.929
4dbz NDPPutative ketoacyl reductase 1.3.1 0.708
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.703
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.697
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.686
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.683
3ai3 NDPNADPH-sorbose reductase / 0.679
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.679
2i3g NAPN-acetyl-gamma-glutamyl-phosphate reductase 1.2.1.38 0.677
3qrw NDPPutative ketoacyl reductase 1.3.1 0.676
4fda NAP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.673
3ai2 NDPNADPH-sorbose reductase / 0.670
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.670
4b8w NAPGDP-L-fucose synthase 1.1.1.271 0.666
4e5y NDPGDP-L-fucose synthase 1.1.1.271 0.660
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.659
3uce NDPDehydrogenase / 0.658
2v6g NAP3-oxo-Delta(4,5)-steroid 5-beta-reductase / 0.656
1bsv NDPGDP-L-fucose synthase / 0.655