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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1dtn APG Mandelate racemase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1dtn APGMandelate racemase / 0.908
1mdr APGMandelate racemase / 0.792
4hnc 0UTMandelate racemase / 0.730
1mdl SMNMandelate racemase / 0.699
1yq7 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.684
3w2w ATPCRISPR system Cmr subunit Cmr2 / 0.666
1yv5 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.656
4l65 C2F5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 2.1.1.14 0.656
4z17 PEPEnolase / 0.654