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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1dr4 HBI Dihydrofolate reductase 1.5.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1dr4 HBIDihydrofolate reductase 1.5.1.3 0.759
1dr3 HBIDihydrofolate reductase 1.5.1.3 0.685
4hi0 GDPUrease accessory protein UreG / 0.666
3nxr D2DDihydrofolate reductase 1.5.1.3 0.663
2gr0 ADPFerredoxin reductase / 0.650
4g01 GDPRas-related protein RABF2b / 0.650