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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1d2s DHT Sex hormone-binding globulin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1d2s DHTSex hormone-binding globulin / 1.090
1kdk DHTSex hormone-binding globulin / 1.062
1kdm DHTSex hormone-binding globulin / 0.952
1f5f DHTSex hormone-binding globulin / 0.932
1lhv NOGSex hormone-binding globulin / 0.898
1lho AOMSex hormone-binding globulin / 0.804
2ylo TESAndrogen receptor / 0.721
1t7f DHTAndrogen receptor / 0.707
3cot STR3-oxo-5-beta-steroid 4-dehydrogenase / 0.697
3s79 ASDAromatase 1.14.14.14 0.692
2mm3 CHOGastrotropin / 0.686
2z4j DHTAndrogen receptor / 0.684
4at2 ASDPossible succinate dehydrogenase / 0.680
2ab2 SNLMineralocorticoid receptor / 0.678
1t76 DHTAndrogen receptor / 0.677
4jbt ASDCytochrome P450 monooxygenase / 0.676
2aba STRPentaerythritol tetranitrate reductase / 0.674
3nuv ASDSteroid Delta-isomerase 5.3.3.1 0.673
4ofr DHTAndrogen receptor / 0.671
1lhn AONSex hormone-binding globulin / 0.664
2q7l TESAndrogen receptor / 0.664
2qpy DHTAndrogen receptor / 0.664
4e5l DBHPolymerase acidic protein / 0.663
4q0a 4OAVitamin D3 receptor A / 0.662
3eqm ASDAromatase 1.14.14.14 0.661
2rlc CHDCholoylglycine hydrolase 3.5.1.24 0.660
3cav CI23-oxo-5-beta-steroid 4-dehydrogenase / 0.658
3uzz ASD3-oxo-5-beta-steroid 4-dehydrogenase / 0.657
4ple CPSNuclear receptor subfamily 5 group A member 2 / 0.656
1jtv TESEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.653
1xu7 CPSCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.653
3uzx AOM3-oxo-5-beta-steroid 4-dehydrogenase / 0.653
3uzx AOX3-oxo-5-beta-steroid 4-dehydrogenase / 0.653
1lnm DTXBilin-binding protein / 0.652
1y9r 1CAMineralocorticoid receptor / 0.651