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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1ciz DPS Stromelysin-1 3.4.24.17

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1ciz DPSStromelysin-1 3.4.24.17 1.127
1caq DPSStromelysin-1 3.4.24.17 0.902
1b8y IN7Stromelysin-1 3.4.24.17 0.847
1zvx FINNeutrophil collagenase 3.4.24.34 0.773
1bzs BSINeutrophil collagenase 3.4.24.34 0.755
1hy7 MBSStromelysin-1 3.4.24.17 0.726
4ja1 NGHStromelysin-1 3.4.24.17 0.703
2ow1 7MRMatrix metalloproteinase-9 3.4.24.35 0.702
1d7x SPCStromelysin-1 3.4.24.17 0.690
1d8f SPIStromelysin-1 3.4.24.17 0.690
2y03 Y01Beta-1 adrenergic receptor / 0.682
1b3d S27Stromelysin-1 3.4.24.17 0.679
3oho Z79Stromelysin-1 3.4.24.17 0.673
1bqo N25Stromelysin-1 3.4.24.17 0.668
1g49 111Stromelysin-1 3.4.24.17 0.668
4dpe NGHStromelysin-1 3.4.24.17 0.663
2wo9 068Macrophage metalloelastase 3.4.24.65 0.662
4i03 L88Macrophage metalloelastase 3.4.24.65 0.659
2w0d CGSMacrophage metalloelastase 3.4.24.65 0.656
1g4k HQQStromelysin-1 3.4.24.17 0.650