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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1c1b GCA Gag-Pol polyprotein 2.7.7.49

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1c1b GCAGag-Pol polyprotein 2.7.7.49 1.147
1rt1 MKCGag-Pol polyprotein 2.7.7.49 0.801
1c1c 612Gag-Pol polyprotein 2.7.7.49 0.749
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1rt2 TNKGag-Pol polyprotein 2.7.7.49 0.714
1ep4 S11Gag-Pol polyprotein 2.7.7.49 0.659
3ffi 3OBGag-Pol polyprotein 2.7.7.49 0.658
1tl3 H20Gag-Pol polyprotein 2.7.7.49 0.654
1jla TNKGag-Pol polyprotein 2.7.7.49 0.653
1tl1 H18Gag-Pol polyprotein 2.7.7.49 0.651