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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1bwb 146 Gag-Pol polyprotein 3.4.23.16

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1bwb 146Gag-Pol polyprotein 3.4.23.16 1.594
1qbt 146Gag-Pol polyprotein 3.4.23.16 1.329
1qbr XV6Gag-Pol polyprotein 3.4.23.16 1.142
1bwa XV6Gag-Pol polyprotein 3.4.23.16 1.108
1bv7 XV6Gag-Pol polyprotein 3.4.23.16 0.923
1mer DMQGag-Pol polyprotein 3.4.23.16 0.904
1hvr XK2Gag-Pol polyprotein / 0.880
1qbu 846Gag-Pol polyprotein 3.4.23.16 0.836
1met DMPGag-Pol polyprotein 3.4.23.16 0.823
1bv9 XV6Gag-Pol polyprotein 3.4.23.16 0.781
1ajx AH1Gag-Pol polyprotein 3.4.23.16 0.778
1hvk A79Gag-Pol polyprotein / 0.770
2a1e IPFGag-Pol polyprotein 3.4.23.16 0.745
4dfg 0JVGag-Pol polyprotein 3.4.23.16 0.742
1bvg DMPGag-Pol polyprotein 3.4.23.16 0.736
2p3b 3TLV-1 PROTEASE protein / 0.729
2p3b 3TLV-1 protease / 0.729
3ndu ROCGag-Pol polyprotein 3.4.23.16 0.710
3pwm 017Gag-Pol polyprotein 3.4.23.16 0.709
2q5k AB1Protease / 0.708
2rkf AB1Pol protein / 0.705
1d4y TPVGag-Pol polyprotein 3.4.23.16 0.702
1m0b 0ZQGag-Pol polyprotein 3.4.23.16 0.701
3sa5 A69Protease / 0.701
3kf0 3TLGag-Pol polyprotein / 0.695
4gb2 0LQGag-Pol polyprotein 2.7.7.49 0.695
1hvj A78Gag-Pol polyprotein / 0.691
1odw 0E8Gag-Pol polyprotein 3.4.23.16 0.691
3o9h K2EGag-Pol polyprotein / 0.691
1meu DMPGag-Pol polyprotein 3.4.23.16 0.688
1hvh Q82Gag-Pol polyprotein 3.4.23.16 0.686
3oxw 017Gag-Pol polyprotein 3.4.23.16 0.686
3kfs 3TLGag-Pol polyprotein / 0.685
1msm JE2Gag-Pol polyprotein 3.4.23.16 0.684
3ggx GGXGag-Pol polyprotein / 0.683
3tl9 ROCGag-Pol polyprotein 3.4.23.16 0.680
1hpv 478Gag-Pol polyprotein / 0.679
2f3k RO1Protease / 0.678
1msn JE2Gag-Pol polyprotein 3.4.23.16 0.676
1g35 AHFGag-Pol polyprotein 3.4.23.16 0.675
2o4p TPVProtease / 0.672
1dw6 0Q4Gag-Pol polyprotein 3.4.23.16 0.671
1mrx K57Gag-Pol polyprotein 3.4.23.16 0.671
3el4 ROCGag-Pol polyprotein 3.4.23.16 0.671
1z1r HBHGag-Pol polyprotein 3.4.23.16 0.670
4heg G52Gag-Pol polyprotein 3.4.23.16 0.670
1hii C20Gag-Pol polyprotein / 0.669
1kzk JE2Gag-Pol polyprotein 3.4.23.16 0.669
3qn8 NI7Gag-Pol polyprotein 3.4.23.16 0.667
3o9d K19Pol polyprotein / 0.666
3oxc ROCProtease / 0.666
2a4f AAUV-1 protease / 0.665
3k4v ROCGag-Pol polyprotein 3.4.23.16 0.665
3a2o KNJGag-Pol polyprotein 3.4.23.16 0.664
3ekt 017Gag-Pol polyprotein 3.4.23.16 0.664
1d4s TPVGag-Pol polyprotein 3.4.23.16 0.663
2fle AIProtease / 0.662
3ucb 017Gag-Pol polyprotein / 0.662
4hdb G52Gag-Pol polyprotein 3.4.23.16 0.661
3mws 017Pol protein / 0.660
3ggu 017Gag-Pol polyprotein 3.4.23.16 0.659
4dqc 017Gag-Pol polyprotein / 0.659
1ec3 MS3Gag-Pol polyprotein 3.4.23.16 0.658
2psv MUVProtease / 0.657
2qnn QN1Gag-Pol polyprotein 3.4.23.16 0.657
2r5q 1UNGag-Pol polyprotein / 0.657
1dmp DMQGag-Pol polyprotein 3.4.23.16 0.656
2hc0 AB2Protease / 0.656
1n49 RITGag-Pol polyprotein 3.4.23.16 0.655
3el5 1UNGag-Pol polyprotein / 0.655
3ekx 1UNGag-Pol polyprotein 3.4.23.16 0.653
3sm2 478Putative gag-pro-pol polyprotein / 0.652
2p3c 3TLProtease / 0.651
3ok9 G52Gag-Pol polyprotein 3.4.23.16 0.651
3pwr ROCGag-Pol polyprotein 3.4.23.16 0.650
4ye3 G04Gag-Pol polyprotein 3.4.23.16 0.650