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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
1b3d S27 Stromelysin-1 3.4.24.17

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
1b3d S27Stromelysin-1 3.4.24.17 0.984
4dpe NGHStromelysin-1 3.4.24.17 0.757
1d8f SPIStromelysin-1 3.4.24.17 0.746
3oho Z79Stromelysin-1 3.4.24.17 0.743
4ja1 NGHStromelysin-1 3.4.24.17 0.737
1bqo N25Stromelysin-1 3.4.24.17 0.716
1d8m BBHStromelysin-1 3.4.24.17 0.701
1d5j MM3Stromelysin-1 3.4.24.17 0.687
3e8r 615Disintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.685
1atl 0QISnake venom metalloproteinase atrolysin-D 3.4.24.42 0.683
1zxc IH6Disintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.680
1ciz DPSStromelysin-1 3.4.24.17 0.679
3o2x 3O2Collagenase 3 3.4.24 0.679
1g05 BBHStromelysin-1 3.4.24.17 0.673
1yqy 915Lethal factor 3.4.24.83 0.673
2w0d CGSMacrophage metalloelastase 3.4.24.65 0.670
1jk3 BATMacrophage metalloelastase 3.4.24.65 0.669
3zxh E41Collagenase 3 3.4.24 0.669
2i47 KGYDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.662
2jnp NGHStromelysin-1 3.4.24.17 0.660
2wo8 077Macrophage metalloelastase 3.4.24.65 0.657
4q4e BB2Aminopeptidase N 3.4.11.2 0.656
2i47 INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.655